PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G132500.1
Common NamePHAVU_006G132500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family FAR1
Protein Properties Length: 708aa    MW: 81506.9 Da    PI: 5.8882
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G132500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.54.6e-2398182190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         ++Yn+YAke+GF +r+++s ++++++e   + ++C++eg++++++ +     ++r+etrtgC a++++++ ++++w+v++++leHnH++ 
  Phvul.006G132500.1  98 NYYNTYAKEIGFATRVKSSWTKRNSKEKRGAVLCCNCEGFKTTKEAN-----SHRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHSFD 182
                         69****************************************99888.....999********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2098182IPR004330FAR1 DNA binding domain
PfamPF105511.2E-28303396IPR018289MULE transposase domain
PROSITE profilePS509669.693589625IPR007527Zinc finger, SWIM-type
SMARTSM005759.7E-6600627IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MTDDTMCSPS DKDLSLSPNL DITIDDSSPN SEQLLDIVDE GNELDNECGQ LFDIDGSERE  60
NGRDETTVVD SHSGESQGKD CPPPVVGMEF DTYDDAYNYY NTYAKEIGFA TRVKSSWTKR  120
NSKEKRGAVL CCNCEGFKTT KEANSHRKET RTGCLAMIRL RLVESNRWRV DEVKLEHNHS  180
FDPERAQNSK SHKRMDSRAK RKVEPTLDVE VRTIKLYRMP VVDASGYGSS NSTEGGTSNH  240
INCSKRLKLK RGDLELISNY FCRIQLTNPN FFYVMDLNDD GQLRNVFWIE SRSRAAYSYF  300
GDVVAFDSTC LSNNYEIPLV AFVGVNHHGK SVLLGCGLLA DETFETYIWL FRAWLTCMTG  360
RPPQTMITNK CKALQSAIAE VFPRAHHRIC LSQVMQSILG CFVQFQEYEA FQIALTKVIY  420
DSKTVDEFER AWDDLTQHFG IRNHEKILTL HEEREHWAPV YSKDTFFAGI SDYEKGESVV  480
PFFKGHVHQQ TSLKEFFEIY ELVQQKKHKT EVLDDFESCD LSSLLKTRCY YELQISKLYT  540
NAVFRKFQDE VVMMPSCFSI TQTQTSGSVV TYMVKEREGE DPATDARHFE VIYDKGGTEV  600
RCICSCFNFK GYLCRHALYI LNYNGVEEIP CQYILSRWRK DFKRLYVPHL SADNVDISNP  660
VQCFDHLYKR AMQVVEEGMI SQDHYMVSWQ AFKESLNKVR LVADKIE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007147532.10.0hypothetical protein PHAVU_006G132500g
SwissprotQ9S7930.0FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBLV7BSI10.0V7BSI1_PHAVU; Uncharacterized protein
STRINGGLYMA15G13160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.10.0FAR1-related sequence 8